"""
The ``mlflow.spacy`` module provides an API for logging and loading spaCy models.
This module exports spacy models with the following flavors:
spaCy (native) format
This is the main flavor that can be loaded back into spaCy.
:py:mod:`mlflow.pyfunc`
Produced for use by generic pyfunc-based deployment tools and batch inference, this
flavor is created only if spaCy's model pipeline has at least one
`TextCategorizer <https://spacy.io/api/textcategorizer>`_.
"""
import logging
import os
import pandas as pd
import yaml
import mlflow
from mlflow import pyfunc
from mlflow.exceptions import MlflowException
from mlflow.models import Model, ModelSignature
from mlflow.models.model import MLMODEL_FILE_NAME
from mlflow.models.utils import ModelInputExample, _save_example
from mlflow.tracking.artifact_utils import _download_artifact_from_uri
from mlflow.utils.environment import (
_mlflow_conda_env,
_validate_env_arguments,
_process_pip_requirements,
_process_conda_env,
_CONDA_ENV_FILE_NAME,
_REQUIREMENTS_FILE_NAME,
_CONSTRAINTS_FILE_NAME,
_PYTHON_ENV_FILE_NAME,
_PythonEnv,
)
from mlflow.utils.requirements_utils import _get_pinned_requirement
from mlflow.utils.docstring_utils import format_docstring, LOG_MODEL_PARAM_DOCS
from mlflow.utils.file_utils import write_to
from mlflow.utils.model_utils import (
_get_flavor_configuration,
_validate_and_copy_code_paths,
_add_code_from_conf_to_system_path,
_validate_and_prepare_target_save_path,
)
FLAVOR_NAME = "spacy"
_logger = logging.getLogger(__name__)
[docs]def get_default_pip_requirements():
"""
:return: A list of default pip requirements for MLflow Models produced by this flavor.
Calls to :func:`save_model()` and :func:`log_model()` produce a pip environment
that, at minimum, contains these requirements.
"""
return [_get_pinned_requirement("spacy")]
[docs]def get_default_conda_env():
"""
:return: The default Conda environment for MLflow Models produced by calls to
:func:`save_model()` and :func:`log_model()`.
"""
return _mlflow_conda_env(additional_pip_deps=get_default_pip_requirements())
[docs]@format_docstring(LOG_MODEL_PARAM_DOCS.format(package_name=FLAVOR_NAME))
def save_model(
spacy_model,
path,
conda_env=None,
code_paths=None,
mlflow_model=None,
signature: ModelSignature = None,
input_example: ModelInputExample = None,
pip_requirements=None,
extra_pip_requirements=None,
metadata=None,
):
"""
Save a spaCy model to a path on the local file system.
:param spacy_model: spaCy model to be saved.
:param path: Local path where the model is to be saved.
:param conda_env: {{ conda_env }}
:param code_paths: A list of local filesystem paths to Python file dependencies (or directories
containing file dependencies). These files are *prepended* to the system
path when the model is loaded.
:param mlflow_model: :py:mod:`mlflow.models.Model` this flavor is being added to.
:param signature: :py:class:`ModelSignature <mlflow.models.ModelSignature>`
describes model input and output :py:class:`Schema <mlflow.types.Schema>`.
The model signature can be :py:func:`inferred <mlflow.models.infer_signature>`
from datasets with valid model input (e.g. the training dataset with target
column omitted) and valid model output (e.g. model predictions generated on
the training dataset), for example:
.. code-block:: python
from mlflow.models.signature import infer_signature
train = df.drop_column("target_label")
predictions = ... # compute model predictions
signature = infer_signature(train, predictions)
:param input_example: Input example provides one or several instances of valid
model input. The example can be used as a hint of what data to feed the
model. The given example will be converted to a Pandas DataFrame and then
serialized to json using the Pandas split-oriented format. Bytes are
base64-encoded.
:param pip_requirements: {{ pip_requirements }}
:param extra_pip_requirements: {{ extra_pip_requirements }}
:param metadata: Custom metadata dictionary passed to the model and stored in the MLmodel file.
.. Note:: Experimental: This parameter may change or be removed in a future
release without warning.
"""
import spacy
_validate_env_arguments(conda_env, pip_requirements, extra_pip_requirements)
path = os.path.abspath(path)
_validate_and_prepare_target_save_path(path)
model_data_subpath = "model.spacy"
model_data_path = os.path.join(path, model_data_subpath)
os.makedirs(model_data_path)
code_dir_subpath = _validate_and_copy_code_paths(code_paths, path)
if mlflow_model is None:
mlflow_model = Model()
if signature is not None:
mlflow_model.signature = signature
if input_example is not None:
_save_example(mlflow_model, input_example, path)
if metadata is not None:
mlflow_model.metadata = metadata
# Save spacy-model
spacy_model.to_disk(path=model_data_path)
# Save the pyfunc flavor if at least one text categorizer in spaCy pipeline
if any(
isinstance(pipe_component[1], spacy.pipeline.TextCategorizer)
for pipe_component in spacy_model.pipeline
):
pyfunc.add_to_model(
mlflow_model,
loader_module="mlflow.spacy",
data=model_data_subpath,
conda_env=_CONDA_ENV_FILE_NAME,
python_env=_PYTHON_ENV_FILE_NAME,
code=code_dir_subpath,
)
else:
_logger.warning(
"Generating only the spacy flavor for the provided spacy model. This means the model "
"can be loaded back via `mlflow.spacy.load_model`, but cannot be loaded back using "
"pyfunc APIs like `mlflow.pyfunc.load_model` or via the `mlflow models` CLI commands. "
"MLflow will only generate the pyfunc flavor for spacy models containing a pipeline "
"component that is an instance of spacy.pipeline.TextCategorizer."
)
mlflow_model.add_flavor(
FLAVOR_NAME, spacy_version=spacy.__version__, data=model_data_subpath, code=code_dir_subpath
)
mlflow_model.save(os.path.join(path, MLMODEL_FILE_NAME))
if conda_env is None:
if pip_requirements is None:
default_reqs = get_default_pip_requirements()
# To ensure `_load_pyfunc` can successfully load the model during the dependency
# inference, `mlflow_model.save` must be called beforehand to save an MLmodel file.
inferred_reqs = mlflow.models.infer_pip_requirements(
model_data_path,
FLAVOR_NAME,
fallback=default_reqs,
)
default_reqs = sorted(set(inferred_reqs).union(default_reqs))
else:
default_reqs = None
conda_env, pip_requirements, pip_constraints = _process_pip_requirements(
default_reqs,
pip_requirements,
extra_pip_requirements,
)
else:
conda_env, pip_requirements, pip_constraints = _process_conda_env(conda_env)
with open(os.path.join(path, _CONDA_ENV_FILE_NAME), "w") as f:
yaml.safe_dump(conda_env, stream=f, default_flow_style=False)
# Save `constraints.txt` if necessary
if pip_constraints:
write_to(os.path.join(path, _CONSTRAINTS_FILE_NAME), "\n".join(pip_constraints))
# Save `requirements.txt`
write_to(os.path.join(path, _REQUIREMENTS_FILE_NAME), "\n".join(pip_requirements))
_PythonEnv.current().to_yaml(os.path.join(path, _PYTHON_ENV_FILE_NAME))
[docs]@format_docstring(LOG_MODEL_PARAM_DOCS.format(package_name=FLAVOR_NAME))
def log_model(
spacy_model,
artifact_path,
conda_env=None,
code_paths=None,
registered_model_name=None,
signature: ModelSignature = None,
input_example: ModelInputExample = None,
pip_requirements=None,
extra_pip_requirements=None,
metadata=None,
**kwargs,
):
"""
Log a spaCy model as an MLflow artifact for the current run.
:param spacy_model: spaCy model to be saved.
:param artifact_path: Run-relative artifact path.
:param conda_env: {{ conda_env }}
:param code_paths: A list of local filesystem paths to Python file dependencies (or directories
containing file dependencies). These files are *prepended* to the system
path when the model is loaded.
:param registered_model_name: If given, create a model version under
``registered_model_name``, also creating a registered model if one
with the given name does not exist.
:param signature: :py:class:`ModelSignature <mlflow.models.ModelSignature>`
describes model input and output :py:class:`Schema <mlflow.types.Schema>`.
The model signature can be :py:func:`inferred <mlflow.models.infer_signature>`
from datasets with valid model input (e.g. the training dataset with target
column omitted) and valid model output (e.g. model predictions generated on
the training dataset), for example:
.. code-block:: python
from mlflow.models.signature import infer_signature
train = df.drop_column("target_label")
predictions = ... # compute model predictions
signature = infer_signature(train, predictions)
:param input_example: Input example provides one or several instances of valid
model input. The example can be used as a hint of what data to feed the
model. The given example will be converted to a Pandas DataFrame and then
serialized to json using the Pandas split-oriented format. Bytes are
base64-encoded.
:param pip_requirements: {{ pip_requirements }}
:param extra_pip_requirements: {{ extra_pip_requirements }}
:param metadata: Custom metadata dictionary passed to the model and stored in the MLmodel file.
.. Note:: Experimental: This parameter may change or be removed in a future
release without warning.
:param kwargs: kwargs to pass to ``spacy.save_model`` method.
:return: A :py:class:`ModelInfo <mlflow.models.model.ModelInfo>` instance that contains the
metadata of the logged model.
"""
return Model.log(
artifact_path=artifact_path,
flavor=mlflow.spacy,
registered_model_name=registered_model_name,
spacy_model=spacy_model,
conda_env=conda_env,
code_paths=code_paths,
signature=signature,
input_example=input_example,
pip_requirements=pip_requirements,
extra_pip_requirements=extra_pip_requirements,
metadata=metadata,
**kwargs,
)
def _load_model(path):
import spacy
path = os.path.abspath(path)
return spacy.load(path)
class _SpacyModelWrapper:
def __init__(self, spacy_model):
self.spacy_model = spacy_model
def predict(self, dataframe):
"""
Only works for predicting using text categorizer.
Not suitable for other pipeline components (e.g: parser)
:param dataframe: pandas dataframe containing texts to be categorized
expected shape is (n_rows,1 column)
:return: dataframe with predictions
"""
if len(dataframe.columns) != 1:
raise MlflowException("Shape of input dataframe must be (n_rows, 1column)")
return pd.DataFrame(
{"predictions": dataframe.iloc[:, 0].apply(lambda text: self.spacy_model(text).cats)}
)
def _load_pyfunc(path):
"""
Load PyFunc implementation. Called by ``pyfunc.load_model``.
:param path: Local filesystem path to the MLflow Model with the ``spacy`` flavor.
"""
return _SpacyModelWrapper(_load_model(path))
[docs]def load_model(model_uri, dst_path=None):
"""
Load a spaCy model from a local file (if ``run_id`` is ``None``) or a run.
:param model_uri: The location, in URI format, of the MLflow model. For example:
- ``/Users/me/path/to/local/model``
- ``relative/path/to/local/model``
- ``s3://my_bucket/path/to/model``
- ``runs:/<mlflow_run_id>/run-relative/path/to/model``
- ``models:/<model_name>/<model_version>``
- ``models:/<model_name>/<stage>``
For more information about supported URI schemes, see
`Referencing Artifacts <https://www.mlflow.org/docs/latest/concepts.html#
artifact-locations>`_.
:param dst_path: The local filesystem path to which to download the model artifact.
This directory must already exist. If unspecified, a local output
path will be created.
:return: A spaCy loaded model
"""
local_model_path = _download_artifact_from_uri(artifact_uri=model_uri, output_path=dst_path)
flavor_conf = _get_flavor_configuration(model_path=local_model_path, flavor_name=FLAVOR_NAME)
_add_code_from_conf_to_system_path(local_model_path, flavor_conf)
# Flavor configurations for models saved in MLflow version <= 0.8.0 may not contain a
# `data` key; in this case, we assume the model artifact path to be `model.spacy`
spacy_model_file_path = os.path.join(local_model_path, flavor_conf.get("data", "model.spacy"))
return _load_model(path=spacy_model_file_path)